Software

OliveHealthR

a shiny-app for analyzing the data of the OliveHealth project.

COSMONET

COx Survival Methods based On NETworks: novel R package for survival analysis using omics data.

Jewel and Jewel 2.0

A novel method for the joint estimation of Gaussian grahical models from multiple datasets.

GEENAR

a novel tool for MALDI/ToF MS spectra analysis.

easyreporting

Helps creating report for improving Reproducible computational Research. Available as R package from Bioconductor.

DEScan2

Integrated peak and differential caller, specifically designed for broad epigenomic signals. Available as R package from Bioconductor.

StructuRly

Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis. Available as R package from GitHub and as Shiny app at StructuRly App

OliveR

Multivariate analysis of data and geographic display of results. Available as R package from GitHub.

HiCeekR

An R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface. Available as R package from GitHub.

RNASeqGUI

A graphical user interface for the identification of differentially expressed genes from RNA-Seq experiments.

ALE-HSA21

Integrated and a user-friendly relational database with detailed information about chromosome 21

BATS

User friendly GUI software for Bayesian Analysis of Time Series microarray experiments