Software
INet-Tool
A R package for Network Integration.
AFTnet
A R package for network-constraint survival analysis method based on the Weibull accelerated failure time (AFT).
methyLImp2
A R package for faster missing value estimation for DNA methylation data.
ADViSEArrays
In preparation.
ADViSEABioassays
In preparation
ADViSELipidomics
A workflow for analyzing lipidomics data.
OliveHealthR
a shiny-app for analyzing the data of the OliveHealth project.
COSMONET
COx Survival Methods based On NETworks: novel R package for survival analysis using omics data.
Jewel and Jewel 2.0
A novel method for the joint estimation of Gaussian grahical models from multiple datasets.
GEENAR
a novel tool for MALDI/ToF MS spectra analysis.
easyreporting
Helps creating report for improving Reproducible computational Research. Available as R package from Bioconductor.
DEScan2
Integrated peak and differential caller, specifically designed for broad epigenomic signals. Available as R package from Bioconductor.
StructuRly
Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis. Available as R package from GitHub and as Shiny app at StructuRly App
OliveR
Multivariate analysis of data and geographic display of results. Available as R package from GitHub.
HiCeekR
An R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface. Available as R package from GitHub.
RNASeqGUI
A graphical user interface for the identification of differentially expressed genes from RNA-Seq experiments.
ALE-HSA21
Integrated and a user-friendly relational database with detailed information about chromosome 21
BATS
User friendly GUI software for Bayesian Analysis of Time Series microarray experiments